svtyper

Bayesian genotyper for structural variants

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Commits

Last Commit
2yrs ago
Total Commits
561
In last 12 months
0

Commit frequency over last 12 months

No commits

Monthly Commits

0
Last month

Latest Commits

2 years ago
  • Merge pull request #107 from apregier/parsing_fix
  • New pypi just wants name of license in setup.py
  • Update version
  • Pin version to something compatible with 2.7
  • Get the last > char
3 years ago
  • Merge pull request #97 from hall-lab/v0.7.0
  • Increment version
  • Fix help formatting error

Versions

Average time between versions

N/A
Major
ev
8
months
Minor
ev
7
months
Patch

Version History

4
Total Versions

Versions

Latest Versions

Issues

Open Issues

41
Last month

Average time to close issues

0h
Last month

Time to close issues

Less Than a Day
37%
1 - 7 Days
5%
8 - 13 Days
7%
Over 30 Days
13%
Not Fixed Yet
39%

Latest Issues

Reference calls with no support and missing calls
3mos ago
, 0 comments
I have question about Genotype information in SVtyper output
6mos ago
, 0 comments
Issue while running the executable.
7mos ago
, 2 comments
SVtyper on lumpy traditional vcf
1yr ago
, 0 comments
stricter joining of vcfs
1yr ago
, 0 comments
ValueError: mate not found
1yr ago
, 11 comments
ignore proper pair flag when defining distribution
1yr ago
, 2 comments
Numerical result out of range error
1yr ago
, 3 comments

Pull Requests

Open Pull Requests

4

Average time to merge pull requests

6
d

Time to merge pull requests

Less Than a Day
74%
1 - 7 Days
11%
8 - 13 Days
2%
Over 30 Days
4%
Not Merged Yet
9%

Latest Pull Requests

Update svtyper to count reads at breakpoints separately
2 years ago
, 1 comments
Fixed #103 (KeyError: 'CIPOS')
2 years ago
, 4 comments
update for python 3
2 years ago
, 0 comments
Get the last > char
2 years ago
, 0 comments
v0.7.0
3 years ago
, 0 comments
improve svtyper speed by ~30%
3 years ago
, 3 comments
Create svtyper-parallel
3 years ago
, 0 comments
Port code to python3 and add parallelization per individual
4 years ago
, 0 comments

Contributors (10)

Colby Chiang
320 Commits
13 Merges
13 PRs
indraniel
92 Commits
1 Merges
1 PRs
Dave Larson
Bioinformatics https://twitter.com/Ernfrid77
66 Commits
13 Merges
14 PRs
Indraniel Das
56 Commits
Colby Chiang
12 Commits
13 Merges
13 PRs
Brent Pedersen
Doing genomics at University of Utrecht
5 Commits
5 Merges
8 PRs
Allison Penner Regier
5 Commits
1 Merges
1 PRs
Dave Larson
Bioinformatics https://twitter.com/Ernfrid77
3 Commits
13 Merges
14 PRs
chapmanb
Biologist and programmer
1 Commits
1 Merges
1 PRs
Spencer Kelley
1 Commits
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