MONAI Label is a server-client system that facilitates interactive medical image annotation by using AI. It is an open-source and easy-to-install ecosystem that can run locally on a machine with one or two GPUs. Both server and client work on the same/different machine. However, initial support for multiple users is restricted. It shares the same principles with MONAI.
The codebase is currently under active development.
MONAI Label supports following OS with GPU/CUDA enabled.
To install the current release, you can simply run:
pip install monailabel # download sample apps/dataset monailabel apps --download --name deepedit_left_atrium --output apps monailabel datasets --download --name Task02_Heart --output datasets # run server (ubuntu) monailabel start_server --app apps/deepedit_left_atrium --studies datasets/Task02_Heart/imagesTr # run server (windows) monailabel start_server --app apps\deepedit_left_atrium --studies datasets\Task02_Heart\imagesTr
For prerequisites, other installation methods (using the default GitHub branch, using Docker, etc.), please refer to the installation guide.
Once you start the MONAI Label Server, by default it will be up and serving at http://127.0.0.1:8000/. Open the serving URL in browser. It will provide you the list of Rest APIs available.
Download Preview Release from https://download.slicer.org/ and install MONAI Label plugin from Slicer Extension Manager.
Refer 3D Slicer plugin for other options to install and run MONAI Label plugin in 3D Slicer.
To avoid accidentally using an older Slicer version, you may want to uninstall any previously installed 3D Slicer package.
MONAI Label comes with pre-built plugin for OHIF Viewer.
Please install Orthanc before using OHIF Viewer. For Ubuntu 20.x, Orthanc can be installed as
apt-get install orthanc orthanc-dicomweb. However, you have to upgrade to latest version by following steps mentioned here
You can use PlastiMatch to convert NIFTI to DICOM
OHIF Viewer will be accessible at http://127.0.0.1:8000/ohif/
For guidance on making a contribution to MONAI Label, see the contributing guidelines.
Ask and answer questions over on MONAI Label's GitHub Discussions tab.