This October 2020 poster discusses the context and long-run ambitions:
Our Colab notebook demonstrates key features with Python, one of several language bindings.
USE AT YOUR OWN RISK: This project is not associated with the SQLite developers. The database storage extensions are designed to preserve ACID transaction safety, but they're young and unlikely to be totally bug-free.
Start Here 👉 full documentation site
We supply the extension prepackaged for Linux x86-64 and macOS Catalina. An up-to-date version of SQLite itself is also required, as specified in the docs.
Programming language support:
More to come. (Help wanted; see Language Bindings Guide)
Most will prefer to install a pre-built shared library (see above). To build from source, see our Actions yml (Ubuntu 20.04) or Dockerfile (CentOS 7) used to build the more-portable releases. Briefly, you'll need:
cmake -DCMAKE_BUILD_TYPE=Release -B build . cmake --build build -j 4 --target genomicsqlite
build/libgenomicsqlite.so. To run the test suite, you'll furthermore need:
pre-commit run --all-files # formatters+linters cmake -DCMAKE_BUILD_TYPE=Debug -B build . cmake --build build -j 4 env -C build ctest -V