FiPy

FiPy is a Finite Volume PDE solver written in Python

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Overview

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.. only:: latex

:term:FiPy is an object oriented, partial differential equation (PDE) solver, written in :term:Python, based on a standard finite volume (FV) approach. The framework has been developed in the Materials Science and Engineering Division (MSED) and Center for Theoretical and Computational Materials Science (CTCMS), in the Material Measurement Laboratory (MML) at the National Institute of Standards and Technology (NIST).

The solution of coupled sets of PDEs is ubiquitous to the numerical simulation of science problems. Numerous PDE solvers exist, using a variety of languages and numerical approaches. Many are proprietary, expensive and difficult to customize. As a result, scientists spend considerable resources repeatedly developing limited tools for specific problems. Our approach, combining the FV method and :term:Python, provides a tool that is extensible, powerful and freely available. A significant advantage to :term:Python is the existing suite of tools for array calculations, sparse matrices and data rendering.

The :term:FiPy framework includes terms for transient diffusion, convection and standard sources, enabling the solution of arbitrary combinations of coupled elliptic, hyperbolic and parabolic PDEs. Currently implemented models include phase field :cite:BoettingerReview:2002 :cite:ChenReview:2002 :cite:McFaddenReview:2002 treatments of polycrystalline, dendritic, and electrochemical phase transformations, as well as drug eluting stents :cite:Saylor:2011p2794, reactive wetting :cite:PhysRevE.82.051601, photovoltaics :cite:Hangarter:2011p2795 and a level set treatment of the electrodeposition process :cite:NIST:damascene:2001.

.. only:: latex

The latest information about :term:FiPy can be found at http://www.ctcms.nist.gov/fipy/.

See the latest updates in the :ref:CHANGELOG.


Even if you don't read manuals...

...please read :ref:INSTALLATION, :ref:USAGE and :ref:FAQ, as well as :mod:examples.diffusion.mesh1D.


Download and Installation

Please refer to :ref:INSTALLATION for details on download and installation. :term:FiPy can be redistributed and/or modified freely, provided that any derivative works bear some notice that they are derived from it, and any modified versions bear some notice that they have been modified.


Support

You can communicate with the :term:FiPy developers and with other users via our mailing list and we welcome you to use the issue tracker for bugs, support requests, feature requests and patch submissions https://github.com/usnistgov/fipy/issues. We also monitor StackOverflow_ for questions tagged with "fipy". We welcome collaborative efforts on this project.

.. toctree::

documentation/MAIL


Conventions and Notation

:term:FiPy is driven by :term:Python script files than you can view or modify in any text editor. :term:FiPy sessions are invoked from a command-line shell, such as :command:tcsh or :command:bash.

Throughout, text to be typed at the keyboard will appear like this. Commands to be issued from an interactive shell will appear::

$ like this

where you would enter the text ("like this") following the shell prompt, denoted by "$".

Text blocks of the form::

>>> a = 3 * 4
>>> a
12
>>> if a == 12:
...     print "a is twelve"
...
a is twelve

are intended to indicate an interactive session in the :term:Python interpreter. We will refer to these as "interactive sessions" or as "doctest blocks". The text ">>>" at the beginning of a line denotes the primary prompt, calling for input of a :term:Python command. The text "..." denotes the secondary prompt, which calls for input that continues from the line above, when required by :term:Python syntax. All remaining lines, which begin at the left margin, denote output from the :term:Python interpreter. In all cases, the prompt is supplied by the :term:Python interpreter and should not be typed by you.

.. warning::

:term:Python is sensitive to indentation and care should be taken to enter text exactly as it appears in the examples.

When references are made to file system paths, it is assumed that the current working directory is the :term:FiPy distribution directory, referred to as the "base directory", such that::

examples/diffusion/steadyState/mesh1D.py

will correspond to, e.g.::

/some/where/FiPy-X.Y/examples/diffusion/steadyState/mesh1D.py

Paths will always be rendered using POSIX conventions (path elements separated by "/"). Any references of the form::

examples.diffusion.steadyState.mesh1D

are in the :term:Python module notation and correspond to the equivalent POSIX path given above.

We may at times use a

.. note::

to indicate something that may be of interest

or a

.. warning::

to indicate something that could cause serious problems.

.. _MML: http://www.nist.gov/mml/ .. _CTCMS: http://www.ctcms.nist.gov/ .. _MSED: http://www.nist.gov/mml/msed/ .. _NIST: http://www.nist.gov/ .. _issue tracker: https://github.com/usnistgov/fipy/issues .. _mailing list: http://www.ctcms.nist.gov/fipy/documentation/MAIL.html .. _StackOverflow: http://stackoverflow.com/questions/tagged/fipy

.. |GitHub| image:: https://img.shields.io/github/contributors/usnistgov/fipy.svg .. _GitHub: https://github.com/usnistgov/fipy .. |gitter| image:: https://badges.gitter.im/usnistgov/fipy.svg .. _gitter: https://gitter.im/usnistgov/fipy?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=body_badge .. |CircleCI| image:: https://img.shields.io/circleci/project/github/usnistgov/fipy/master.svg?label=Linux .. _CircleCI: https://circleci.com/gh/usnistgov/fipy .. |TravisCI| image:: https://img.shields.io/travis/usnistgov/fipy/master.svg?label=macOS .. _TravisCI: https://travis-ci.com/github/usnistgov/fipy .. |AppVeyor| image:: https://ci.appveyor.com/api/projects/status/github/usnistgov/fipy?branch=master&svg=true&failingText=Windows%20-%20failing&passingText=Windows%20-%20passing&pendingText=Windows%20-%20pending .. _AppVeyor: https://ci.appveyor.com/project/usnistgov/fipy .. |OpenHub| image:: https://www.openhub.net/p/fipy/widgets/project_thin_badge.gif .. _OpenHub: https://www.openhub.net/p/fipy .. |PyPI| image:: https://img.shields.io/pypi/v/fipy.svg .. _PyPI: https://pypi.python.org/pypi/FiPy .. |CondaForge| image:: https://anaconda.org/conda-forge/fipy/badges/installer/conda.svg .. _CondaForge: https://anaconda.org/conda-forge/fipy .. |Depsy| image:: http://depsy.org/api/package/pypi/FiPy/badge.svg .. _Depsy: http://depsy.org/package/python/FiPy .. |Codacy| image:: https://api.codacy.com/project/badge/Grade/d02921bb54b14e88a1e2e1f5520133f4 .. _Codacy: https://www.codacy.com/app/tkphd/fipy?utm_source=github.com&utm_medium=referral&utm_content=usnistgov/fipy&utm_campaign=Badge_Grade .. |Binder| image:: https://mybinder.org/badge.svg .. _Binder: https://mybinder.org/v2/gh/usnistgov/fipy/master?filepath=examples%2Findex.ipynb

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